Publication: A new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome.
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Identifiers
Date
2021-06-10
Authors
Soret, Perrine
Le-Dantec, Christelle
Desvaux, Emiko
Foulquier, Nathan
Chassagnol, Bastien
Hubert, Sandra
Jamin, Christophe
Barturen, Guillermo
Desachy, Guillaume
Devauchelle-Pensec, Valerie
Advisors
Journal Title
Journal ISSN
Volume Title
Publisher
Nature Publishing Group
Abstract
There is currently no approved treatment for primary Sjögren's syndrome, a disease that primarily affects adult women. The difficulty in developing effective therapies is -in part- because of the heterogeneity in the clinical manifestation and pathophysiology of the disease. Finding common molecular signatures among patient subgroups could improve our understanding of disease etiology, and facilitate the development of targeted therapeutics. Here, we report, in a cross-sectional cohort, a molecular classification scheme for Sjögren's syndrome patients based on the multi-omic profiling of whole blood samples from a European cohort of over 300 patients, and a similar number of age and gender-matched healthy volunteers. Using transcriptomic, genomic, epigenetic, cytokine expression and flow cytometry data, combined with clinical parameters, we identify four groups of patients with distinct patterns of immune dysregulation. The biomarkers we identify can be used by machine learning classifiers to sort future patients into subgroups, allowing the re-evaluation of response to treatments in clinical trials.
Description
MeSH Terms
Adult
Cytokines
DNA methylation
Databases, genetic
Databases, protein
Female
Flow cytometry
Genome-wide association study
Humans
Inflammation
Interferons
Male
Middle aged
Multigene family
Polymorphism, single nucleotide
Proteome
RNA-seq
Sjogren's syndrome
Transcriptome
Cytokines
DNA methylation
Databases, genetic
Databases, protein
Female
Flow cytometry
Genome-wide association study
Humans
Inflammation
Interferons
Male
Middle aged
Multigene family
Polymorphism, single nucleotide
Proteome
RNA-seq
Sjogren's syndrome
Transcriptome
DeCS Terms
Bases de datos genéticas
Bases de datos de proteínas
Citocinas
Citometría de flujo
Estudio de asociación del genoma completo
Familia de multigenes
Inflamación
Interferones
Metilación de ADN
Polimorfismo de nucleótido simple
Síndrome de Sjögren
Bases de datos de proteínas
Citocinas
Citometría de flujo
Estudio de asociación del genoma completo
Familia de multigenes
Inflamación
Interferones
Metilación de ADN
Polimorfismo de nucleótido simple
Síndrome de Sjögren
CIE Terms
Keywords
Autoantibodies, Biomarkers, Chemokines, Cohort studies, Computational diology, Computer simulation
Citation
Soret P, Le Dantec C, Desvaux E, Foulquier N, Chassagnol B, Hubert S, et al. A new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome. Nat Commun. 2021 Jun 10;12(1):3523
Collections
Centro Pfizer-Andalucía de Genómica e Investigación Oncológica (GENYO)
Biobanco del Sistema Sanitario de Andalucía
Instituto Maimónides de Investigación Biomédica de Córdoba (IMIBIC)
SAS - Hospital Regional Universitario de Málaga
SAS - Hospital Universitario Reina Sofía
SAS - Hospital Universitario San Cecilio
Load more Biobanco del Sistema Sanitario de Andalucía
Instituto Maimónides de Investigación Biomédica de Córdoba (IMIBIC)
SAS - Hospital Regional Universitario de Málaga
SAS - Hospital Universitario Reina Sofía
SAS - Hospital Universitario San Cecilio