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A new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome.

dc.contributor.authorSoret, Perrine
dc.contributor.authorLe-Dantec, Christelle
dc.contributor.authorDesvaux, Emiko
dc.contributor.authorFoulquier, Nathan
dc.contributor.authorChassagnol, Bastien
dc.contributor.authorHubert, Sandra
dc.contributor.authorJamin, Christophe
dc.contributor.authorBarturen, Guillermo
dc.contributor.authorDesachy, Guillaume
dc.contributor.authorDevauchelle-Pensec, Valerie
dc.contributor.authorBoudjeniba, Cheïma
dc.contributor.authorCornec, Divi
dc.contributor.authorSaraux, Alain
dc.contributor.authorJousse-Joulin, Sandrine
dc.contributor.authorBarbarroja, Nuria
dc.contributor.authorRodriguez-Pinto, Ignasi
dc.contributor.authorDe Langhe, Ellen
dc.contributor.authorBeretta, Lorenzo
dc.contributor.authorChizzolini, Carlo
dc.contributor.authorKovacs, Laszlo
dc.contributor.authorWitte, Torsten
dc.contributor.authorBettacchioli, Eleonore
dc.contributor.authorButtgereit, Anne
dc.contributor.authorMakowska, Zuzanna
dc.contributor.authorLesche, Ralf
dc.contributor.authorBorghi, Maria Orietta
dc.contributor.authorMartin, Javier
dc.contributor.authorCourtade-Gaiani, Sophie
dc.contributor.authorXuereb, Laura
dc.contributor.authorGuedj, Mickaël
dc.contributor.authorMoingeon, Philippe
dc.contributor.authorAlarcon-Riquelme, Marta E
dc.contributor.authorLaigle, Laurence
dc.contributor.authorPers, Jacques-Olivier
dc.contributor.funderInnovative Medicines Initiative Joint Undertaking
dc.contributor.funderEuropean Union’s Seventh Framework Program
dc.contributor.groupPRECISESADS Flow Cytometry Consortium
dc.date.accessioned2023-02-09T11:40:21Z
dc.date.available2023-02-09T11:40:21Z
dc.date.issued2021-06-10
dc.description.abstractThere is currently no approved treatment for primary Sjögren's syndrome, a disease that primarily affects adult women. The difficulty in developing effective therapies is -in part- because of the heterogeneity in the clinical manifestation and pathophysiology of the disease. Finding common molecular signatures among patient subgroups could improve our understanding of disease etiology, and facilitate the development of targeted therapeutics. Here, we report, in a cross-sectional cohort, a molecular classification scheme for Sjögren's syndrome patients based on the multi-omic profiling of whole blood samples from a European cohort of over 300 patients, and a similar number of age and gender-matched healthy volunteers. Using transcriptomic, genomic, epigenetic, cytokine expression and flow cytometry data, combined with clinical parameters, we identify four groups of patients with distinct patterns of immune dysregulation. The biomarkers we identify can be used by machine learning classifiers to sort future patients into subgroups, allowing the re-evaluation of response to treatments in clinical trials.
dc.description.sponsorshipThe research leading to these results has received support from the Innovative Medicines Initiative Joint Undertaking under the Grant Agreement Number 115565 (PRECISESADS project), resources of which are composed of financial contribution from the European Union’s Seventh Framework Program (FP7/2007–2013) and EFPIA companies’ in-kind contribution. LBAI was supported by the Agence Nationale de la Recherche under the “Investissement d’Avenir” program with the Reference ANR-11-LABX-0016- 001 (Labex IGO) and the Région Bretagne. The authors would like to particularly express their gratitude to the patients, nurses, technicians and many others who helped directly or indirectly in the consecution of this study. They are grateful to the Institut Français de Bioinformatique (ANR-11-INBS-0013), the Roscoff Bioinformatics platform ABiMS (http://abims.sb-roscoff.fr) for providing computing and storage resources and the Hypérion platform at LBAI (Brest, France) for flow cytometry facilities. Finally, this work is now supported by ELIXIR Luxembourg via its data hosting service.
dc.description.versionSi
dc.identifier.citationSoret P, Le Dantec C, Desvaux E, Foulquier N, Chassagnol B, Hubert S, et al. A new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome. Nat Commun. 2021 Jun 10;12(1):3523
dc.identifier.doi10.1038/s41467-021-23472-7
dc.identifier.essn2041-1723
dc.identifier.pmcPMC8192578
dc.identifier.pmid34112769
dc.identifier.pubmedURLhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8192578/pdf
dc.identifier.unpaywallURLhttps://www.nature.com/articles/s41467-021-23472-7.pdf
dc.identifier.urihttp://hdl.handle.net/10668/17985
dc.issue.number1
dc.journal.titleNature communications
dc.journal.titleabbreviationNat Commun
dc.language.isoen
dc.organizationHospital Universitario Reina Sofía
dc.organizationInstituto Maimónides de Investigación Biomédica de Córdoba-IMIBIC
dc.organizationHospital Universitario Virgen de las Nieves
dc.organizationCentro Pfizer-Universidad de Granada-Junta de Andalucía de Genómica e Investigación Oncológica-GENYO
dc.organizationBiobanco del Sistema Sanitario Público de Andalucía
dc.organizationHospital Universitario San Cecilio
dc.organizationHospital Universitario Regional de Málaga
dc.page.number18
dc.provenanceRealizada la curación de contenido 05/03/2025
dc.publisherNature Publishing Group
dc.pubmedtypeJournal Article
dc.pubmedtypeResearch Support, Non-U.S. Gov't
dc.relation.projectID115565
dc.relation.projectIDFP7/2007–2013
dc.rightsAttribution 4.0 International
dc.rights.accessRightsopen access
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjectAutoantibodies
dc.subjectBiomarkers
dc.subjectChemokines
dc.subjectCohort studies
dc.subjectComputational diology
dc.subjectComputer simulation
dc.subject.decsBases de datos genéticas
dc.subject.decsBases de datos de proteínas
dc.subject.decsCitocinas
dc.subject.decsCitometría de flujo
dc.subject.decsEstudio de asociación del genoma completo
dc.subject.decsFamilia de multigenes
dc.subject.decsInflamación
dc.subject.decsInterferones
dc.subject.decsMetilación de ADN
dc.subject.decsPolimorfismo de nucleótido simple
dc.subject.decsSíndrome de Sjögren
dc.subject.meshAdult
dc.subject.meshCytokines
dc.subject.meshDNA methylation
dc.subject.meshDatabases, genetic
dc.subject.meshDatabases, protein
dc.subject.meshFemale
dc.subject.meshFlow cytometry
dc.subject.meshGenome-wide association study
dc.subject.meshHumans
dc.subject.meshInflammation
dc.subject.meshInterferons
dc.subject.meshMale
dc.subject.meshMiddle aged
dc.subject.meshMultigene family
dc.subject.meshPolymorphism, single nucleotide
dc.subject.meshProteome
dc.subject.meshRNA-seq
dc.subject.meshSjogren's syndrome
dc.subject.meshTranscriptome
dc.titleA new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome.
dc.typeresearch article
dc.type.hasVersionVoR
dc.volume.number12
dspace.entity.typePublication

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