Publication: A new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome.
dc.contributor.author | Soret, Perrine | |
dc.contributor.author | Le-Dantec, Christelle | |
dc.contributor.author | Desvaux, Emiko | |
dc.contributor.author | Foulquier, Nathan | |
dc.contributor.author | Chassagnol, Bastien | |
dc.contributor.author | Hubert, Sandra | |
dc.contributor.author | Jamin, Christophe | |
dc.contributor.author | Barturen, Guillermo | |
dc.contributor.author | Desachy, Guillaume | |
dc.contributor.author | Devauchelle-Pensec, Valerie | |
dc.contributor.author | Boudjeniba, Cheïma | |
dc.contributor.author | Cornec, Divi | |
dc.contributor.author | Saraux, Alain | |
dc.contributor.author | Jousse-Joulin, Sandrine | |
dc.contributor.author | Barbarroja, Nuria | |
dc.contributor.author | Rodriguez-Pinto, Ignasi | |
dc.contributor.author | De Langhe, Ellen | |
dc.contributor.author | Beretta, Lorenzo | |
dc.contributor.author | Chizzolini, Carlo | |
dc.contributor.author | Kovacs, Laszlo | |
dc.contributor.author | Witte, Torsten | |
dc.contributor.author | Bettacchioli, Eleonore | |
dc.contributor.author | Buttgereit, Anne | |
dc.contributor.author | Makowska, Zuzanna | |
dc.contributor.author | Lesche, Ralf | |
dc.contributor.author | Borghi, Maria Orietta | |
dc.contributor.author | Martin, Javier | |
dc.contributor.author | Courtade-Gaiani, Sophie | |
dc.contributor.author | Xuereb, Laura | |
dc.contributor.author | Guedj, Mickaël | |
dc.contributor.author | Moingeon, Philippe | |
dc.contributor.author | Alarcon-Riquelme, Marta E | |
dc.contributor.author | Laigle, Laurence | |
dc.contributor.author | Pers, Jacques-Olivier | |
dc.contributor.funder | Innovative Medicines Initiative Joint Undertaking | |
dc.contributor.funder | European Union’s Seventh Framework Program | |
dc.contributor.group | PRECISESADS Flow Cytometry Consortium | |
dc.date.accessioned | 2023-02-09T11:40:21Z | |
dc.date.available | 2023-02-09T11:40:21Z | |
dc.date.issued | 2021-06-10 | |
dc.description.abstract | There is currently no approved treatment for primary Sjögren's syndrome, a disease that primarily affects adult women. The difficulty in developing effective therapies is -in part- because of the heterogeneity in the clinical manifestation and pathophysiology of the disease. Finding common molecular signatures among patient subgroups could improve our understanding of disease etiology, and facilitate the development of targeted therapeutics. Here, we report, in a cross-sectional cohort, a molecular classification scheme for Sjögren's syndrome patients based on the multi-omic profiling of whole blood samples from a European cohort of over 300 patients, and a similar number of age and gender-matched healthy volunteers. Using transcriptomic, genomic, epigenetic, cytokine expression and flow cytometry data, combined with clinical parameters, we identify four groups of patients with distinct patterns of immune dysregulation. The biomarkers we identify can be used by machine learning classifiers to sort future patients into subgroups, allowing the re-evaluation of response to treatments in clinical trials. | |
dc.description.sponsorship | The research leading to these results has received support from the Innovative Medicines Initiative Joint Undertaking under the Grant Agreement Number 115565 (PRECISESADS project), resources of which are composed of financial contribution from the European Union’s Seventh Framework Program (FP7/2007–2013) and EFPIA companies’ in-kind contribution. LBAI was supported by the Agence Nationale de la Recherche under the “Investissement d’Avenir” program with the Reference ANR-11-LABX-0016- 001 (Labex IGO) and the Région Bretagne. The authors would like to particularly express their gratitude to the patients, nurses, technicians and many others who helped directly or indirectly in the consecution of this study. They are grateful to the Institut Français de Bioinformatique (ANR-11-INBS-0013), the Roscoff Bioinformatics platform ABiMS (http://abims.sb-roscoff.fr) for providing computing and storage resources and the Hypérion platform at LBAI (Brest, France) for flow cytometry facilities. Finally, this work is now supported by ELIXIR Luxembourg via its data hosting service. | |
dc.description.version | Si | |
dc.identifier.citation | Soret P, Le Dantec C, Desvaux E, Foulquier N, Chassagnol B, Hubert S, et al. A new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome. Nat Commun. 2021 Jun 10;12(1):3523 | |
dc.identifier.doi | 10.1038/s41467-021-23472-7 | |
dc.identifier.essn | 2041-1723 | |
dc.identifier.pmc | PMC8192578 | |
dc.identifier.pmid | 34112769 | |
dc.identifier.pubmedURL | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8192578/pdf | |
dc.identifier.unpaywallURL | https://www.nature.com/articles/s41467-021-23472-7.pdf | |
dc.identifier.uri | http://hdl.handle.net/10668/17985 | |
dc.issue.number | 1 | |
dc.journal.title | Nature communications | |
dc.journal.titleabbreviation | Nat Commun | |
dc.language.iso | en | |
dc.organization | Hospital Universitario Reina Sofía | |
dc.organization | Instituto Maimónides de Investigación Biomédica de Córdoba-IMIBIC | |
dc.organization | Hospital Universitario Virgen de las Nieves | |
dc.organization | Centro Pfizer-Universidad de Granada-Junta de Andalucía de Genómica e Investigación Oncológica-GENYO | |
dc.organization | Biobanco del Sistema Sanitario Público de Andalucía | |
dc.organization | Hospital Universitario San Cecilio | |
dc.organization | Hospital Universitario Regional de Málaga | |
dc.page.number | 18 | |
dc.provenance | Realizada la curación de contenido 05/03/2025 | |
dc.publisher | Nature Publishing Group | |
dc.pubmedtype | Journal Article | |
dc.pubmedtype | Research Support, Non-U.S. Gov't | |
dc.relation.projectID | 115565 | |
dc.relation.projectID | FP7/2007–2013 | |
dc.rights | Attribution 4.0 International | |
dc.rights.accessRights | open access | |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | |
dc.subject | Autoantibodies | |
dc.subject | Biomarkers | |
dc.subject | Chemokines | |
dc.subject | Cohort studies | |
dc.subject | Computational diology | |
dc.subject | Computer simulation | |
dc.subject.decs | Bases de datos genéticas | |
dc.subject.decs | Bases de datos de proteínas | |
dc.subject.decs | Citocinas | |
dc.subject.decs | Citometría de flujo | |
dc.subject.decs | Estudio de asociación del genoma completo | |
dc.subject.decs | Familia de multigenes | |
dc.subject.decs | Inflamación | |
dc.subject.decs | Interferones | |
dc.subject.decs | Metilación de ADN | |
dc.subject.decs | Polimorfismo de nucleótido simple | |
dc.subject.decs | Síndrome de Sjögren | |
dc.subject.mesh | Adult | |
dc.subject.mesh | Cytokines | |
dc.subject.mesh | DNA methylation | |
dc.subject.mesh | Databases, genetic | |
dc.subject.mesh | Databases, protein | |
dc.subject.mesh | Female | |
dc.subject.mesh | Flow cytometry | |
dc.subject.mesh | Genome-wide association study | |
dc.subject.mesh | Humans | |
dc.subject.mesh | Inflammation | |
dc.subject.mesh | Interferons | |
dc.subject.mesh | Male | |
dc.subject.mesh | Middle aged | |
dc.subject.mesh | Multigene family | |
dc.subject.mesh | Polymorphism, single nucleotide | |
dc.subject.mesh | Proteome | |
dc.subject.mesh | RNA-seq | |
dc.subject.mesh | Sjogren's syndrome | |
dc.subject.mesh | Transcriptome | |
dc.title | A new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome. | |
dc.type | research article | |
dc.type.hasVersion | VoR | |
dc.volume.number | 12 | |
dspace.entity.type | Publication |
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Centro Pfizer-Andalucía de Genómica e Investigación Oncológica (GENYO)
Biobanco del Sistema Sanitario de Andalucía
Instituto Maimónides de Investigación Biomédica de Córdoba (IMIBIC)
SAS - Hospital Regional Universitario de Málaga
SAS - Hospital Universitario Reina Sofía
SAS - Hospital Universitario San Cecilio
Load more Biobanco del Sistema Sanitario de Andalucía
Instituto Maimónides de Investigación Biomédica de Córdoba (IMIBIC)
SAS - Hospital Regional Universitario de Málaga
SAS - Hospital Universitario Reina Sofía
SAS - Hospital Universitario San Cecilio