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Phylogenetic Analysis of the 2020 West Nile Virus (WNV) Outbreak in Andalusia (Spain)

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dc.contributor.authorCasimiro-Soriguer, Carlos S.
dc.contributor.authorPerez-Florido, Javier
dc.contributor.authorFernandez-Rueda, Jose L.
dc.contributor.authorPedrosa-Corral, Irene
dc.contributor.authorGuillot-Sulay, Vicente
dc.contributor.authorLorusso, Nicola
dc.contributor.authorMartinez-Gonzalez, Luis Javier
dc.contributor.authorNavarro-Marí, Jose M.
dc.contributor.authorDopazo, Joaquin
dc.contributor.authorSanbonmatsu-Gámez, Sara
dc.contributor.authoraffiliation[Casimiro-Soriguer,CS; Perez-Florido,J; Fernandez-Rueda,JL; Dopazo,J] Clinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocio, Sevilla, Spain. [Casimiro-Soriguer,CS; Perez-Florido,J; Dopazo,J] Computational Systems Medicine, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocio, Sevilla, Spain. [Pedrosa-Corral,I; Guillot-Sulay,V; Sanbonmatsu-Gamez,S] Laboratorio de Referencia de Virus de Andalucía, Servicio de Microbiología, Hospital Virgen de las Nieves, Granada, Spain. [Pedrosa-Corral,I; Guillot-Sulay,V; Sanbonmatsu-Gamez,S] Instituto de Investigación Biosanitaria, ibs.GRANADA, Granada, Spain. [Lorusso,N] Dirección General de Salud Pública y Ordenación Farmacéutica, Consejería de Salud y Familias, Junta de Andalucía, Sevilla, Spain. [Martinez-Gonzalez,LJ] GENYO, Centre for Genomics and Oncological Research: Pfizer-University of Granada-Andalusian Regional Government, Granada, Spain. [Dopazo,J] Bioinformatics in Rare Diseases (BiER), Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), FPS, Hospital Virgen del Rocio, Sevilla, Spain. [Dopazo,J] ELIXIR.ES/FPS, Hospital Virgen del Rocio, Sevilla, Spain.
dc.contributor.funderThis research was funded by grants PT17/0009/0006 from the ISCIII, co-funded by the European Regional Development Fund (ERDF) as well as H2020 “ELIXIR-EXCELERATE fast-track ELIXIR implementation and drive early user exploitation across the life sciences” (GA 676559).
dc.date.accessioned2022-03-08T11:10:02Z
dc.date.available2022-03-08T11:10:02Z
dc.date.issued2021-05-05
dc.description.abstractDuring recent decades West Nile Virus (WNV) outbreaks have continuously occurred in the Mediterranean area. In August 2020 a new WNV outbreak affected 71 people with meningoencephalitis in Andalusia and six more cases were detected in Extremadura (south-west of Spain), causing a total of eight deaths. The whole genomes of four viruses were obtained and phylogenetically analyzed in the context of recent outbreaks. The Andalusian viral samples belonged to lineage 1 and were relatively similar to those of previous outbreaks which occurred in the Mediterranean region. Here we present a detailed analysis of the outbreak, including an extensive phylogenetic study. As part on this effort, we implemented a local Nextstrain server, which has become a constituent piece of regional epidemiological surveillance, wherein forthcoming genomes of environmental samples or, eventually, future outbreaks, will be included.es_ES
dc.description.versionYeses_ES
dc.identifier.citationCasimiro-Soriguer CS, Perez-Florido J, Fernandez-Rueda JL, Pedrosa-Corral I, Guillot-Sulay V, Lorusso N, et al. Phylogenetic Analysis of the 2020 West Nile Virus (WNV) Outbreak in Andalusia (Spain). Viruses. 2021; 13(5):836.es_ES
dc.identifier.doi10.3390/v13050836es_ES
dc.identifier.essn1999-4915
dc.identifier.pmcPMC8148183
dc.identifier.pmid34063166es_ES
dc.identifier.urihttp://hdl.handle.net/10668/3467
dc.journal.titleViruses
dc.language.isoen
dc.page.number10 p.
dc.publisherMDPI AGes_ES
dc.relation.publisherversionhttps://www.mdpi.com/1999-4915/13/5/836es_ES
dc.rightsAttribution-NonCommercial-NoDerivatives 4.0 Internacional*
dc.rightsAtribución 4.0 Internacional*
dc.rights.accessRightsopen access
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/*
dc.subjectWest Nile viruses_ES
dc.subjectOutbreakes_ES
dc.subjectMeningoencephalitises_ES
dc.subjectEpidemiologyes_ES
dc.subjectPhylogenyes_ES
dc.subjectWhole genome sequencinges_ES
dc.subjectFiebre del Nilo occidentales_ES
dc.subjectBrotes de enfermedadeses_ES
dc.subjectMeningoencefalitises_ES
dc.subjectEpidemiologíaes_ES
dc.subjectFilogeniaes_ES
dc.subjectSecuenciación completa del genomaes_ES
dc.subject.meshMedical Subject Headings::Health Care::Environment and Public Health::Public Health::Disease Outbreakses_ES
dc.subject.meshMedical Subject Headings::Organisms::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Primates::Haplorhini::Catarrhini::Hominidae::Humanses_ES
dc.subject.meshMedical Subject Headings::Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Genetic Techniques::Sequence Analysis::Sequence Analysis, DNA::DNA Mutational Analysises_ES
dc.subject.meshMedical Subject Headings::Geographical Locations::Geographic Locations::Europe::Spaines_ES
dc.subject.meshMedical Subject Headings::Diseases::Nervous System Diseases::Central Nervous System Diseases::Central Nervous System Infections::Central Nervous System Viral Diseases::Encephalitis::Encephalitis, Viral::Encephalitis, Arbovirus::West Nile Feveres_ES
dc.subject.meshMedical Subject Headings::Organisms::Viruses::Vertebrate Viruses::RNA Viruses::Encephalitis Viruses::Encephalitis Viruses, Japanese::West Nile viruses_ES
dc.subject.meshMedical Subject Headings::Information Science::Information Science::Classification::Phylogenyes_ES
dc.titlePhylogenetic Analysis of the 2020 West Nile Virus (WNV) Outbreak in Andalusia (Spain)es_ES
dc.typeresearch article
dc.type.hasVersionVoR
dspace.entity.typePublication

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Instituto de Investigación Biomédica de Sevilla (IBIS)
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