Publication:
Identification of New Inhibitors with Potential Antitumor Activity from Polypeptide Structures via Hierarchical Virtual Screening.

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Date

2019-08-10

Authors

Ferreira, Elenilze F B
Silva, Luciane B
Costa, Glauber V
Costa, Josivan S
Fujishima, Mayara A T
Leão, Rozires P
Ferreira, Andre L S
Federico, Leonardo B
Silva, Carlos H T P
Rosa, Joaquin M C

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MDPI AG
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Abstract

Leukemias are neoplasms that affect hematopoietic cells, which are developed by genetic alterations (mutations) that lead to the loss of proliferation control mechanisms (maturation and/or cell death). The α4β1 integrin receptor is a therapeutic target for inflammation, autoimmune diseases and lymphoid tumors. This study was carried out to search through the antagonists-based virtual screening for α4β1 receptor. Initially, seventeen (17) structures were selected (based on the inhibitory activity values, IC50) and the structure with the best value was chosen as the pivot. The pharmacophoric pattern was determined from the online PharmaGist server and resulted in a model of score value equal to 97.940 with 15 pharmacophoric characteristics that were statistically evaluated via Pearson correlations, principal component analysis (PCA) and hierarchical clustering analysis (HCA). A refined model generated four pharmacophoric hypotheses totaling 1.478 structures set of Zinc_database. After, the pharmacokinetic, toxicological and biological activity predictions were realized comparing with pivot structure that resulted in five (ZINC72088291, ZINC68842860, ZINC14365931, ZINC09588345 and ZINC91247798) structures with optimal in silico predictions. Therefore, future studies are needed to confirm antitumor potential activity of molecules selected this work with in vitro and in vivo assays.

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MeSH Terms

Antineoplastic Agents
Cluster Analysis
Computer Simulation
Drug Screening Assays, Antitumor
Humans
Models, Molecular
Molecular Conformation
Molecular Structure
Peptides
Structure-Activity Relationship

DeCS Terms

Antineoplásicos
Análisis por conglomerados
Conformación molecular
Ensayos de selección de medicamentos antitumorales
Estructura molecular
Humanos
Modelos moleculares
Péptidos
Relación estructura-actividad
Simulación por computador

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Keywords

HCA, PCA, leukemia, pharmacophore, α4β1 receptor

Citation

Ferreira EFB, Silva LB, Costa GV, Costa JS, Fujishima MAT, Leão RP, et al. Identification of New Inhibitors with Potential Antitumor Activity from Polypeptide Structures via Hierarchical Virtual Screening. Molecules. 2019 Aug 14;24(16):2943.